Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs2112505 | chr19:34410765 | C/T | 6.72E-6 | 480 | 15.7 | 15.83 | 17.38 | KM Plot |
| THCA | rs212165 | chr16:72469463 | C/T | 3.68E-11 | 478 | 14.47 | 14.93 | 16.23 | KM Plot |
| THCA | rs2136665 | chr16:84122206 | A/T | 0 | 490 | 5.8 | 18.77 | 15.17 | KM Plot |
| THCA | rs213731 | chr1:41578198 | A/T | 6.07E-12 | 489 | 17.47 | 17.77 | 14.92 | KM Plot |
| THCA | rs213732 | chr1:41578114 | C/T | 5.91E-7 | 489 | 17.7 | 17.77 | 14.92 | KM Plot |
| THCA | rs213740 | chr1:41621419 | T/C | 2.8E-7 | 490 | 17.47 | 17.77 | 14.92 | KM Plot |
| THCA | rs213741 | chr1:41621385 | A/G | 2.8E-7 | 490 | 17.47 | 17.77 | 14.92 | KM Plot |
| THCA | rs213743 | chr1:41620387 | A/G | 2.8E-7 | 490 | 17.47 | 17.77 | 14.92 | KM Plot |
| THCA | rs213745 | chr1:41631329 | A/C | 2.8E-7 | 490 | 17.47 | 17.77 | 14.92 | KM Plot |
| THCA | rs213749 | chr1:41613890 | C/A | 4.17E-8 | 488 | 17.47 | 17.75 | 14.93 | KM Plot |
| THCA | rs213750 | chr1:41610814 | A/T | 4.17E-8 | 488 | 17.47 | 17.75 | 14.93 | KM Plot |
| THCA | rs213753 | chr1:41607331 | A/G | 3.61E-12 | 489 | 17.7 | 17.75 | 14.93 | KM Plot |
| THCA | rs213755 | chr1:41595165 | G/T | 3.77E-12 | 487 | 17.7 | 17.77 | 14.93 | KM Plot |
| THCA | rs213756 | chr1:41595081 | C/T | 3.77E-12 | 487 | 17.7 | 17.77 | 14.93 | KM Plot |
| THCA | rs213761 | chr1:41591134 | T/C | 3.77E-12 | 487 | 17.7 | 17.77 | 14.93 | KM Plot |